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MSc Informatica Medica
U-Chile / International

The Microbial World Through Different Eyes

| Posgraduate Theoretical and Practical Course 02-12.04.2013 Montevideo, Uruguay |

More Information...


Claudia Piccini, Instituto de Investigaciones Biológicas Clemente Estable
Paola Scavone, Instituto de Investigaciones Biológicas Clemente Estable
Federico Battistoni, Instituto de Investigaciones Biológicas Clemente Estable


Instituto de Investigaciones Biológicas Clemente Estable (IIBCE).
Avenida Italia 3318. CP 11600. Montevideo - Uruguay.


. Fabio Olivares - (Brazil)
. Gilberto Weissmuller - (Brazil)
. Euan James - (UK)
. Silvia Villar - (Uruguay)
. Steffen Härtel - (UChile, Chile)
. Jorge Jara - (UChile, Chile)
. Mauricio Cerda - (UChile, Chile)


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Optical Microscopy & Image Processing:
 Superresolution imaging for neuroscience.
 Fast and robust optical flow for time-lapse microscopy using super-voxels.
 Cell-based quantification of molecular biomarkers in histopathology specimens.
 Algorithms for cytoplasm segmentation of fluorescence labelled cells.
 Development of 3D Architecture of Uropathogenic Proteus mirabilis Batch Culture Biofilms - A Quantitative Confocal Microscopy Approach.

Manuals & More

  ZEISS Principles of Confocal Microscopy

  Principles of Fluorescence Spectroscopy

  LEICE TCS LSI Brochure

  Huygens Professional User Guide from SVI:

  Intracellular Fluorescent Probe Concentrations by Confocal Microscopy, Finck et al. 1998

  Seeing is believing? Alison J. North, The Journal of Cell Biology, Vol. 172, No. 1, January 2, 2006 918

  The Good, the Bad and the Ugly ! Helen Pearson, NATURE, 447, May 2007

  Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control, Cole et al 2011, NATURE PROTOCOL

  IDL/ScianTimeCalc: 1er Manual de Reconstrución 3D


Class 1:   S Härtel:
"Introduction to Fluorescence Microscopy Resolution, Point Spread Function, Deconvolution, Pitfalls, and Perspectives "

Class 2:   J Jara:
"Digital Image Processing "

Class 3:   M Cerda:
"Image Analysis: Shape & Structure "

Class 4:   M Cerda:
"Image Analysis: Dynamics "

Practical work

Practico 1

Universidad de Chile Conicyt Xperts Explora Centro de Estudios Científicos